MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.26189574576903374
cnr4.843181161233462
efc0.5641785114722775
fber132.03671264648438
fwhmavg4.105393333333333
fwhmx3.91006
fwhmy4.39582
fwhmz4.0103
icvscsf0.20309282751065424
icvsgm0.4449934212090733
icvswm0.35191375128027247
inumed0.7249148488044739
inurange0.24066749215126026
qi10.0
qi20.0009920988838453863
rpvecsf24.035658598998637
rpvegm12.178677106330113
rpvewm18.589178016567207
sizex180
sizey256
sizez256
snrcsf2.7882273565784206
snrgm10.568380915735354
snrtotal11.552510161956407
snrwm21.30092221355545
snrdcsf18.355222863915888
snrdgm34.860039327051666
snrdtotal36.23034950467196
snrdwm55.47578632304834
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.6823745082873738
summarybgmad11.809503555297852
summarybgmean43.66419219970703
summarybgmedian42.72245788574219
summarybgn2759205.0
summarybgp0525.816899871826173
summarybgp9564.9924087524414
summarybgstdv12.176889419555664
summarycsfk-0.000999913599484703
summarycsfmad136.27081298828125
summarycsfmean331.1029052734375
summarycsfmedian330.8716735839844
summarycsfn18489.0
summarycsfp05154.06301269531252
summarycsfp95515.2710693359373
summarycsfstdv118.6641845703125
summarygmk0.15835018229264364
summarygmmad59.15921401977539
summarygmmean628.8526611328125
summarygmmedian628.3878784179688
summarygmn43167.0
summarygmp05532.14814453125
summarygmp95725.4240783691406
summarygmstdv59.45854949951172
summarywmk1.9806263152482124
summarywmmad38.166465759277344
summarywmmean995.7140502929688
summarywmmedian1000.0078125
summarywmn202700.0
summarywmp05907.0987731933594
summarywmp951062.3337036132814
summarywmstdv46.94657516479492
tpmoverlapcsf0.22198835015296936
tpmoverlapgm0.5325616598129272
tpmoverlapwm0.5598403215408325
wm2max0.7165798309905221

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumd0de92b45451f5948509616f07a9d6bd
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.