MRIQC: individual T1w report

Summary

Subject ID: 036_ExercisePre.
Date and time: 2018-05-06, 21:06.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.26189574576903374
cnr			4.843181161233462
efc			0.5641785114722775
fber			132.03671264648438
fwhm	avg		4.105393333333333
fwhm	x		3.91006
fwhm	y		4.39582
fwhm	z		4.0103
icvs	csf		0.20309282751065424
icvs	gm		0.4449934212090733
icvs	wm		0.35191375128027247
inu	med		0.7249148488044739
inu	range		0.24066749215126026
qi	1		0.0
qi	2		0.0009920988838453863
rpve	csf		24.035658598998637
rpve	gm		12.178677106330113
rpve	wm		18.589178016567207
size	x		180
size	y		256
size	z		256
snr	csf		2.7882273565784206
snr	gm		10.568380915735354
snr	total		11.552510161956407
snr	wm		21.30092221355545
snrd	csf		18.355222863915888
snrd	gm		34.860039327051666
snrd	total		36.23034950467196
snrd	wm		55.47578632304834
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.6823745082873738
summary	bg	mad	11.809503555297852
summary	bg	mean	43.66419219970703
summary	bg	median	42.72245788574219
summary	bg	n	2759205.0
summary	bg	p05	25.816899871826173
summary	bg	p95	64.9924087524414
summary	bg	stdv	12.176889419555664
summary	csf	k	-0.000999913599484703
summary	csf	mad	136.27081298828125
summary	csf	mean	331.1029052734375
summary	csf	median	330.8716735839844
summary	csf	n	18489.0
summary	csf	p05	154.06301269531252
summary	csf	p95	515.2710693359373
summary	csf	stdv	118.6641845703125
summary	gm	k	0.15835018229264364
summary	gm	mad	59.15921401977539
summary	gm	mean	628.8526611328125
summary	gm	median	628.3878784179688
summary	gm	n	43167.0
summary	gm	p05	532.14814453125
summary	gm	p95	725.4240783691406
summary	gm	stdv	59.45854949951172
summary	wm	k	1.9806263152482124
summary	wm	mad	38.166465759277344
summary	wm	mean	995.7140502929688
summary	wm	median	1000.0078125
summary	wm	n	202700.0
summary	wm	p05	907.0987731933594
summary	wm	p95	1062.3337036132814
summary	wm	stdv	46.94657516479492
tpm	overlap	csf	0.22198835015296936
tpm	overlap	gm	0.5325616598129272
tpm	overlap	wm	0.5598403215408325
wm2max			0.7165798309905221

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	d0de92b45451f5948509616f07a9d6bd
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.